LAT

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:3.0 FPKM
GTEx:17.0 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA011157

 

Antibody CAB002223

 

Antibody CAB012978

 

Endothelial cells

Low   Not detected   Not detected  

Glandular cells

Low   Not detected   High  

Peripheral nerve/ganglion

Not detected   Not available   Not available  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

3.0

overview Male, age 54
Sample 1
FPKM: 2.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 3.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 2.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 2.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 5.0
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 3.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 2.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

17.0

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 21.6
Samples: 149

Max RPKM: 79.2
Min RPKM: 5
Std RPKM: 11.7
Median RPKM: 18.4
GTEX-ZC5H-2426-SM-4WAZ6 79.2
GTEX-Z93S-2626-SM-57WBX 67.2
GTEX-11DXY-2026-SM-5N9CZ 48.4
GTEX-139TS-2226-SM-5J2N1 46.6
GTEX-1477Z-2126-SM-5Q5CM 44.4
GTEX-14A5I-2426-SM-5Q5CP 43.1
GTEX-YECK-2826-SM-5IFHF 42.1
GTEX-145LS-2926-SM-5O99G 41.7
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 12.4
Samples: 196

Max RPKM: 40.9
Min RPKM: 3.2
Std RPKM: 7.1
Median RPKM: 10.2
GTEX-Z93S-2426-SM-5HL8N 40.9
GTEX-11TUW-2026-SM-5EQL8 38.4
GTEX-145MO-2426-SM-5NQ9W 36.9
GTEX-11O72-2226-SM-5PNW2 36.5
GTEX-147JS-2526-SM-5S2Q8 31.9
GTEX-11GSP-1626-SM-5986N 31.2
GTEX-13FHP-2426-SM-5KLZ5 30.1
GTEX-13O3O-2526-SM-5L3DR 26.9
Show all