NES

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:6.8 FPKM
GTEx:10.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:High
Glandular cells:Not detected
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA007007

 

Antibody HPA026111

 

Antibody CAB005889

 

Antibody CAB058692

 

Endothelial cells

High   High   High   High  

Glandular cells

Not detected   Not detected   Low   Not detected  

Peripheral nerve/ganglion

Not detected   Medium   Medium   Not detected  
       
       
       

COLON - HPA RNA-seq

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Average FPKM

6.8

overview Male, age 54
Sample 1
FPKM: 3.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 5.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 4.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 12.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 8.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 8.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 5.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

10.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 12.5
Samples: 149

Max RPKM: 35.6
Min RPKM: 3.9
Std RPKM: 5.5
Median RPKM: 11.5
GTEX-ZVZQ-2626-SM-59HLB 35.6
GTEX-13OW6-2226-SM-5N9FL 30.2
GTEX-139D8-2926-SM-5IJBM 27.7
GTEX-14C39-1626-SM-5S2P4 23.7
GTEX-145LS-2926-SM-5O99G 23.0
GTEX-13X6I-2726-SM-5Q5ET 22.3
GTEX-11DXY-2026-SM-5N9CZ 21.8
GTEX-ZYT6-2826-SM-5GICX 21.8
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 8.9
Samples: 196

Max RPKM: 32.4
Min RPKM: 1.4
Std RPKM: 6.2
Median RPKM: 6.8
GTEX-111VG-2226-SM-5N9DU 32.4
GTEX-13OVG-1426-SM-5K7VP 27.6
GTEX-147JS-2526-SM-5S2Q8 26.6
GTEX-13FHP-2426-SM-5KLZ5 26.1
GTEX-13W3W-2126-SM-5K7UX 25.6
GTEX-ZAB4-2226-SM-5HL97 25.6
GTEX-11O72-2226-SM-5PNW2 24.9
GTEX-145LS-2726-SM-5Q5D8 24.3
Show all