GCAT

COLON - Expression summary

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RNA expression

HPA:5.9 FPKM
GTEx:3.9 RPKM

COLON - Immunohistochemistry

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Antibody staining

Antibody HPA020460

 

Endothelial cells

Low  

Glandular cells

Medium  

Peripheral nerve/ganglion

Medium  
 

COLON - HPA RNA-seq

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Average FPKM

5.9

overview Male, age 54
Sample 1
FPKM: 10.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 6.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 8.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 3.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 5.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 3.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 3.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

3.9

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 3.7
Samples: 149

Max RPKM: 20.7
Min RPKM: 1.3
Std RPKM: 1.8
Median RPKM: 3.4
GTEX-13X6I-2726-SM-5Q5ET 20.7
GTEX-13FH7-1626-SM-5J2O9 8.6
GTEX-X15G-1526-SM-4PQZM 8.1
GTEX-14A5I-2426-SM-5Q5CP 7.3
GTEX-Y3I4-1126-SM-4TT7Y 6.8
GTEX-1339X-1726-SM-5P9J9 6.5
GTEX-1211K-1826-SM-5EGJ2 6.1
GTEX-13X6K-2726-SM-5O9DG 6.1
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 4.1
Samples: 196

Max RPKM: 8.9
Min RPKM: 1.4
Std RPKM: 1.5
Median RPKM: 3.8
GTEX-1399R-2226-SM-5P9JB 8.9
GTEX-1128S-1626-SM-5H12O 8.7
GTEX-XPVG-1826-SM-4B64X 8.6
GTEX-XUJ4-2026-SM-4BOOW 8.3
GTEX-OXRK-1726-SM-3NB16 7.9
GTEX-R53T-1326-SM-48FCQ 7.9
GTEX-144GN-1126-SM-5LU33 7.8
GTEX-TML8-1326-SM-4DXTO 7.6
Show all