VIM

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:324.3 FPKM
GTEx:230.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:High
Glandular cells:Not detected
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA001762

 

Antibody CAB000080

 

Antibody CAB058687

 

Endothelial cells

High   High   High  

Glandular cells

Not detected   Not detected   Not detected  

Peripheral nerve/ganglion

Not available   Not available   Medium  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

324.3

overview Male, age 54
Sample 1
FPKM: 191.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 234.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 164.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 353.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 436.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 527.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 361.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

230.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 268.5
Samples: 149

Max RPKM: 685.2
Min RPKM: 71.3
Std RPKM: 126.8
Median RPKM: 238.3
GTEX-13OVJ-1826-SM-5KM2D 685.2
GTEX-145LS-2926-SM-5O99G 649.7
GTEX-ZYY3-2226-SM-5E45A 590.2
GTEX-13FHO-2726-SM-5K7VG 572.8
GTEX-13SLW-2826-SM-5Q5ES 564.3
GTEX-13X6I-2726-SM-5Q5ET 543.7
GTEX-13X6K-2726-SM-5O9DG 541.9
GTEX-148VJ-2426-SM-5NQ9Y 540.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 192.9
Samples: 196

Max RPKM: 1323.3
Min RPKM: 31.2
Std RPKM: 178.7
Median RPKM: 131.1
GTEX-14C38-2626-SM-5RQI4 1323.3
GTEX-ZXES-1626-SM-5NQ7L 975.0
GTEX-13OVG-1426-SM-5K7VP 964.5
GTEX-13OVI-2026-SM-5J1MU 712.2
GTEX-13W3W-2126-SM-5K7UX 691.0
GTEX-11TTK-2426-SM-5PNYO 634.6
GTEX-13O3O-2526-SM-5L3DR 631.3
GTEX-14BMV-2426-SM-5S2PP 608.8
Show all