CLEC5A

GENERAL INFORMATION

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Gene name

CLEC5A

Gene description

C-type lectin domain family 5, member A

Protein class

Predicted intracellular proteins
Predicted membrane proteins

Predicted localization

Intracellular,Membrane

Number of transcripts

4
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HUMAN PROTEIN ATLAS INFORMATION

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RNA tissue category

HPA:Group enriched (appendix, bone marrow)
GTEx:Tissue enhanced (lung)

Protein evidence

Evidence at protein level

ANTIBODY RELIABILITY

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Data reliability

Pending normal tissue annotation.
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RNA AND PROTEIN EXPRESSION SUMMARY

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RNA expression (FPKM) Protein expression (score)
Brain
N/A
Endocrine tissues
N/A
Bone marrow & immune system
N/A
Muscle tissues
N/A
Lung
N/A
Nasopharynx
N/A
N/A
Bronchus
N/A
N/A
Lung
N/A
Liver & gallbladder
N/A
Liver
N/A
Pancreas
N/A
Pancreas
N/A
Gastrointestinal tract
N/A
Kidney & urinary bladder
N/A
Male tissues
N/A
Testis
N/A
Epididymis
N/A
N/A
Prostate
N/A
Seminal vesicle
N/A
N/A
Female tissues
N/A
Breast
N/A
N/A
Vagina
N/A
N/A
Cervix, uterine
N/A
N/A
Ovary
N/A
Placenta
N/A
Adipose & soft tissue
N/A
Skin
N/A
Skin
N/A


PROTEIN EXPRESSION OVERVIEW

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Pending normal tissue annotation.


RNA EXPRESSION OVERVIEW

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HPA dataset
RNA tissue category:  Group enriched (appendix, bone marrow)

Organ

Expression

GTEx dataset
RNA tissue category:  Tissue enhanced (lung)

Organ

Expression



GENE INFORMATION

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Gene name

CLEC5A (HGNC Symbol)

Synonyms

CLECSF5, MDL-1

Description

C-type lectin domain family 5, member A (HGNC Symbol)

Entrez gene summary

This gene encodes a member of the C-type lectin/C-type lectin-like domain (CTL/CTLD) superfamily. Members of this family share a common protein fold and have diverse functions, such as cell adhesion, cell-cell signalling, glycoprotein turnover, and roles in inflammation and immune response. The encoded type II transmembrane protein interacts with dnax-activation protein 12 and may play a role in cell activation. Alternative splice variants have been described but their full-length sequence has not been determined. [provided by RefSeq, Jul 2008]

Chromosome

7

Cytoband

q34

Chromosome location (bp)

141927357 - 141947007

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000258227 (version 78.38)

Entrez gene

23601

UniProt

Q9NY25 (UniProt - Evidence at protein level)

neXtProt

NX_Q9NY25

Antibodypedia

CLEC5A antibodies


PROTEIN BROWSER

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ENST00000438351
 
ENST00000439991
 
ENST00000546910
 
ENST00000551012
 
 
 
 


PROTEIN INFORMATION

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Splice variant

Ensembl

UniProt

Protein class

Gene ontology

Length
(aa)

Molecular mass
(kDa)

Signal peptide
(predicted)

Transmembrane regions
(predicted)

CLEC5A-001 ENSP00000449999
ENST00000546910
Q9NY25
Show all »
Show » Show » 188 21.5 No 1
CLEC5A-003 ENSP00000446890
ENST00000551012
Q14DL9
Show all »
Show » Show » 165 19.1 No 1
CLEC5A-004 ENSP00000395258
ENST00000439991
C9JCE4
Show all »
Show » Show » 84 9.7 No 0
CLEC5A-006 ENSP00000414897
ENST00000438351
C9JPR7
Show all »
Show » Show » 155 18 No 1