HMBS

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:12.2 FPKM
GTEx:5.5 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA006114

 

Antibody HPA050659

 

Endothelial cells

Medium   Not detected  

Glandular cells

High   High  

Peripheral nerve/ganglion

High   Low  
   
   

COLON - HPA RNA-seq

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Average FPKM

12.2

overview Male, age 54
Sample 1
FPKM: 7.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 11.0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 13.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 7.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 13.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 16.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 17.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

5.5

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 3.9
Samples: 149

Max RPKM: 11.3
Min RPKM: 1.5
Std RPKM: 1.4
Median RPKM: 3.7
GTEX-11TT1-0926-SM-5GU5M 11.3
GTEX-WQUQ-2626-SM-4MVNP 10.1
GTEX-146FH-2426-SM-5Q5EW 7.8
GTEX-YJ8A-1726-SM-5P9IQ 7.6
GTEX-ZTTD-2626-SM-57WEX 7.1
GTEX-ZP4G-1526-SM-57WE5 6.9
GTEX-131XG-1526-SM-5GCNQ 6.5
GTEX-11I78-1326-SM-5PNY9 6.0
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 7.0
Samples: 196

Max RPKM: 16.5
Min RPKM: 1.3
Std RPKM: 3.2
Median RPKM: 6.6
GTEX-U4B1-1126-SM-4DXV3 16.5
GTEX-1399R-2226-SM-5P9JB 15.5
GTEX-T5JW-1126-SM-4DM5V 15.1
GTEX-XUJ4-2026-SM-4BOOW 15.1
GTEX-146FQ-1926-SM-5NQBY 14.6
GTEX-QDVN-1326-SM-48TZ3 14.5
GTEX-QMRM-1226-SM-447C6 14.3
GTEX-11TT1-1026-SM-5PNW7 14.1
Show all