HMGB1

GENERAL INFORMATION

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Gene name

HMGB1

Gene description

High mobility group box 1

Protein class

Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

6
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HUMAN PROTEIN ATLAS INFORMATION

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RNA tissue category

HPA:Expressed in all
GTEx:Expressed in all

Protein evidence

Evidence at protein level

Protein localization

General nuclear expression.

ANTIBODY RELIABILITY

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Data reliability
description

Pending RNA-based expert annotation. Caution, targets protein from more than one gene.

Data reliability

Supportive based on 2 antibodies.
HPA003506 , CAB005873
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RNA AND PROTEIN EXPRESSION SUMMARY

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RNA expression (FPKM) Protein expression (score)
Brain
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Skin



PROTEIN EXPRESSION OVERVIEW

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Organ

Expression



RNA EXPRESSION OVERVIEW

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HPA dataset
RNA tissue category:  Expressed in all

Organ

Expression

GTEx dataset
RNA tissue category:  Expressed in all

Organ

Expression



GENE INFORMATION

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Gene name

HMGB1 (HGNC Symbol)

Synonyms

DKFZp686A04236, HMG1, HMG3, SBP-1

Description

High mobility group box 1 (HGNC Symbol)

Entrez gene summary

Chromosome

13

Cytoband

q12.3

Chromosome location (bp)

30456704 - 30617597

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000189403 (version 78.38)

Entrez gene

3146

UniProt

P09429 (UniProt - Evidence at protein level)

neXtProt

NX_P09429

Antibodypedia

HMGB1 antibodies


PROTEIN BROWSER

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ENST00000326004
 
ENST00000339872
 
ENST00000341423
 
ENST00000399489
 
ENST00000399494
 
ENST00000405805
 
 
 
 


PROTEIN INFORMATION

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Splice variant

Ensembl

UniProt

Protein class

Gene ontology

Length
(aa)

Molecular mass
(kDa)

Signal peptide
(predicted)

Transmembrane regions
(predicted)

HMGB1-001 ENSP00000343040
ENST00000339872
P09429
Show all »
Show » Show » 215 24.9 No 0
HMGB1-003 ENSP00000369904
ENST00000326004
Q5T7C4
Show all »
Show » Show » 158 18.3 No 0
HMGB1-004 ENSP00000345347
ENST00000341423
P09429
Show all »
Show » Show » 215 24.9 No 0
HMGB1-009 ENSP00000382412
ENST00000399489
Q5T7C4
Show all »
Show » Show » 158 18.3 No 0
HMGB1-011 ENSP00000382417
ENST00000399494
P09429
Show all »
Show » Show » 215 24.9 No 0
HMGB1-012 ENSP00000384678
ENST00000405805
P09429
Show all »
Show » Show » 215 24.9 No 0