SCRIB

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:16.5 FPKM
GTEx:18.2 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Not available

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA023557

 

Antibody CAB015463

 

Antibody CAB022081

 

Endothelial cells

Medium   Low   Medium  

Glandular cells

Medium   High   Medium  

Peripheral nerve/ganglion

Medium   Not available   Low  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

16.5

overview Male, age 54
Sample 1
FPKM: 23.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 18.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 21.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 19.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 22.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 6.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 3.0
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

18.2

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 16.2
Samples: 149

Max RPKM: 27
Min RPKM: 5.7
Std RPKM: 4.1
Median RPKM: 16.4
GTEX-139D8-2926-SM-5IJBM 27.0
GTEX-X15G-1526-SM-4PQZM 26.9
GTEX-146FH-2426-SM-5Q5EW 25.7
GTEX-ZAJG-2626-SM-5S2NU 25.4
GTEX-V955-1726-SM-4JBHF 25.3
GTEX-WQUQ-2626-SM-4MVNP 23.7
GTEX-ZTTD-2626-SM-57WEX 23.7
GTEX-13N2G-2226-SM-5IJCU 22.9
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 20.2
Samples: 196

Max RPKM: 32.1
Min RPKM: 6.3
Std RPKM: 5.3
Median RPKM: 20.7
GTEX-13S86-1626-SM-5Q5C5 32.1
GTEX-UJHI-1126-SM-4IHLN 31.6
GTEX-1399R-2226-SM-5P9JB 31.2
GTEX-TML8-1326-SM-4DXTO 30.9
GTEX-145LT-0926-SM-5LU9C 30.1
GTEX-XV7Q-2126-SM-4BRVX 30.0
GTEX-Q2AI-0926-SM-48U1F 29.9
GTEX-OXRK-1726-SM-3NB16 29.4
Show all