GRINA

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:32.9 FPKM
GTEx:81.0 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA036980

 

Antibody HPA036981

 

Endothelial cells

Not detected   Medium  

Glandular cells

Not detected   Low  

Peripheral nerve/ganglion

Medium   Medium  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

32.9

overview Male, age 54
Sample 1
FPKM: 32.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 29.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 22.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 25.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 51.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 39.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 29.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

81.0

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 89.9
Samples: 149

Max RPKM: 184.1
Min RPKM: 46.3
Std RPKM: 21.6
Median RPKM: 85.7
GTEX-1339X-1726-SM-5P9J9 184.1
GTEX-13O1R-2426-SM-5KLZZ 168.3
GTEX-14E6C-2226-SM-5QGQG 161.7
GTEX-148VJ-2426-SM-5NQ9Y 148.1
GTEX-1211K-1826-SM-5EGJ2 144.7
GTEX-11TUW-2326-SM-5EQMO 143.8
GTEX-11TT1-0926-SM-5GU5M 137.4
GTEX-13OVI-2126-SM-5KM3U 133.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 72.0
Samples: 196

Max RPKM: 215.9
Min RPKM: 20.6
Std RPKM: 29.9
Median RPKM: 63.4
GTEX-13W3W-2126-SM-5K7UX 215.9
GTEX-1339X-1626-SM-5IJDN 207.2
GTEX-14C38-2626-SM-5RQI4 165.9
GTEX-11TUW-2026-SM-5EQL8 148.2
GTEX-ZXES-1626-SM-5NQ7L 144.4
GTEX-12WSJ-1526-SM-5GCNI 143.5
GTEX-13OVI-2026-SM-5J1MU 140.6
GTEX-QLQ7-1126-SM-4R1KN 132.8
Show all