SSH3

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:8.5 FPKM
GTEx:15.8 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA019949

 

Antibody HPA019957

 

Endothelial cells

High   Not detected  

Glandular cells

Medium   Not detected  

Peripheral nerve/ganglion

Medium   Low  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

8.5

overview Male, age 54
Sample 1
FPKM: 11.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 9.0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 11.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 9.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 6.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 6.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 5.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

15.8

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 12.4
Samples: 149

Max RPKM: 17.9
Min RPKM: 5.5
Std RPKM: 2.2
Median RPKM: 12.4
GTEX-V955-1726-SM-4JBHF 17.9
GTEX-Y5LM-1426-SM-5RQJL 17.6
GTEX-139TS-2226-SM-5J2N1 17.1
GTEX-ZPU1-1726-SM-4WWFV 17.1
GTEX-13OVI-2126-SM-5KM3U 16.9
GTEX-WHWD-1526-SM-4OORV 16.8
GTEX-13OW8-2726-SM-5L3FZ 16.6
GTEX-131YS-2926-SM-5EGKI 16.4
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 19.1
Samples: 196

Max RPKM: 32
Min RPKM: 4.6
Std RPKM: 5.7
Median RPKM: 19.9
GTEX-U3ZN-2126-SM-4DXU1 32.0
GTEX-S7SF-1926-SM-4AT5B 31.2
GTEX-WOFM-2026-SM-4OOSQ 30.8
GTEX-UJMC-1326-SM-4IHLS 30.6
GTEX-XUJ4-2026-SM-4BOOW 29.3
GTEX-PLZ5-1126-SM-3P613 29.1
GTEX-XPVG-1826-SM-4B64X 29.1
GTEX-Y5LM-1526-SM-4VDTA 28.7
Show all