SYNPO

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:22.3 FPKM
GTEx:14.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:High
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA034631

 

Antibody CAB033265

 

Antibody CAB037325

 

Endothelial cells

High   Low   High  

Glandular cells

Medium   Medium   Not detected  

Peripheral nerve/ganglion

Medium   Low   Not detected  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

22.3

overview Male, age 54
Sample 1
FPKM: 9.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 16.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 18.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 41.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 25.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 23.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 21.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

14.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 15.1
Samples: 149

Max RPKM: 36.7
Min RPKM: 3.5
Std RPKM: 6.2
Median RPKM: 14.4
GTEX-YEC3-2026-SM-4WWFL 36.7
GTEX-WFON-1326-SM-4LVMN 31.0
GTEX-WI4N-2226-SM-4OOS9 30.3
GTEX-147GR-2826-SM-5RQK8 29.5
GTEX-11EMC-1426-SM-5N9E4 28.7
GTEX-145LS-2926-SM-5O99G 28.0
GTEX-131XG-1526-SM-5GCNQ 27.8
GTEX-YJ8A-1726-SM-5P9IQ 27.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 14.3
Samples: 196

Max RPKM: 43.5
Min RPKM: 6.3
Std RPKM: 5.6
Median RPKM: 12.9
GTEX-13W3W-2126-SM-5K7UX 43.5
GTEX-13OVG-1426-SM-5K7VP 41.8
GTEX-111VG-2226-SM-5N9DU 39.2
GTEX-11O72-2226-SM-5PNW2 34.1
GTEX-13OVI-2026-SM-5J1MU 30.3
GTEX-13O3O-2526-SM-5L3DR 29.4
GTEX-ZYVF-2826-SM-5GIDK 26.4
GTEX-ZAB4-2226-SM-5HL97 25.6
Show all