LETM1

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:16.1 FPKM
GTEx:12.2 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA011029

 

Antibody HPA011100

 

Endothelial cells

Medium   Not detected  

Glandular cells

Medium   High  

Peripheral nerve/ganglion

High   Not detected  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

16.1

overview Male, age 54
Sample 1
FPKM: 10.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 16.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 26.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 25.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 12.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 10.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 11.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

12.2

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 5.6
Samples: 149

Max RPKM: 11.9
Min RPKM: 2.5
Std RPKM: 1.5
Median RPKM: 5.3
GTEX-Y5LM-1426-SM-5RQJL 11.9
GTEX-11TT1-0926-SM-5GU5M 11.0
GTEX-V955-1726-SM-4JBHF 9.5
GTEX-12WSL-1826-SM-5LZW9 9.3
GTEX-12WSJ-1426-SM-5GCON 8.8
GTEX-13O1R-2426-SM-5KLZZ 8.8
GTEX-YJ8A-1726-SM-5P9IQ 8.7
GTEX-11WQK-2526-SM-5CVL8 8.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 18.8
Samples: 196

Max RPKM: 54
Min RPKM: 1.8
Std RPKM: 11.2
Median RPKM: 19.3
GTEX-131XG-1826-SM-5LZV4 54.0
GTEX-1399R-2226-SM-5P9JB 46.4
GTEX-ZYWO-1626-SM-5E44H 46.3
GTEX-14E6E-1526-SM-5RQIG 44.4
GTEX-Y5LM-1526-SM-4VDTA 43.9
GTEX-U4B1-1126-SM-4DXV3 39.9
GTEX-ZT9W-1826-SM-51MQX 39.8
GTEX-ZVT2-1926-SM-5GU5T 39.7
Show all