ATRIP

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:2.8 FPKM
GTEx:2.6 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA035437

 

Antibody CAB033109

 

Endothelial cells

Low   Medium  

Glandular cells

Medium   Low  

Peripheral nerve/ganglion

Medium   Low  
   
   

COLON - HPA RNA-seq

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Average FPKM

2.8

overview Male, age 54
Sample 1
FPKM: 1.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 2.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 2.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 2.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 3.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 3.0
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 3.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

2.6

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 2.8
Samples: 149

Max RPKM: 4.6
Min RPKM: 1.6
Std RPKM: 0.5
Median RPKM: 2.7
GTEX-147GR-2826-SM-5RQK8 4.6
GTEX-13X6K-2726-SM-5O9DG 4.2
GTEX-13PL7-2426-SM-5J2N3 4.1
GTEX-145LS-2926-SM-5O99G 4.0
GTEX-ZYY3-2226-SM-5E45A 3.9
GTEX-11ONC-1926-SM-5GU75 3.8
GTEX-13VXT-2026-SM-5L3EW 3.7
GTEX-146FH-2426-SM-5Q5EW 3.7
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 2.5
Samples: 196

Max RPKM: 4.1
Min RPKM: 0.6
Std RPKM: 0.6
Median RPKM: 2.4
GTEX-P78B-1726-SM-3P5ZV 4.1
GTEX-13W3W-2126-SM-5K7UX 4.0
GTEX-144GN-1126-SM-5LU33 4.0
GTEX-PWOO-1326-SM-48TCJ 4.0
GTEX-X5EB-0926-SM-46MVT 4.0
GTEX-13OW6-2126-SM-5N9GL 3.9
GTEX-14BMV-2426-SM-5S2PP 3.8
GTEX-1128S-1626-SM-5H12O 3.7
Show all