MAGOH

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:43.5 FPKM
GTEx:12.2 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA043036

 

Antibody HPA047754

 

Antibody CAB015425

 

Endothelial cells

Medium   Low   High  

Glandular cells

Medium   Medium   High  

Peripheral nerve/ganglion

Medium   Not detected   High  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

43.5

overview Male, age 54
Sample 1
FPKM: 36.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 44.0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 49.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 46.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 38.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 45.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 43.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

12.2

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 11.8
Samples: 149

Max RPKM: 19.2
Min RPKM: 6
Std RPKM: 2.4
Median RPKM: 11.4
GTEX-132AR-2826-SM-5IJFV 19.2
GTEX-ZTSS-1226-SM-51MSZ 18.9
GTEX-11WQK-2526-SM-5CVL8 18.0
GTEX-12WSM-1426-SM-5GCPA 18.0
GTEX-13U4I-2626-SM-5SI9C 17.7
GTEX-13O1R-2426-SM-5KLZZ 17.4
GTEX-11EM3-1626-SM-5N9CO 17.2
GTEX-11TT1-0926-SM-5GU5M 16.5
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 12.6
Samples: 196

Max RPKM: 23.1
Min RPKM: 7.3
Std RPKM: 2.3
Median RPKM: 12.5
GTEX-146FQ-1926-SM-5NQBY 23.1
GTEX-11TT1-1026-SM-5PNW7 22.3
GTEX-11WQK-2126-SM-5EQME 18.2
GTEX-1399R-2226-SM-5P9JB 18.1
GTEX-QDVN-1326-SM-48TZ3 17.7
GTEX-147F3-1926-SM-5SIB9 17.4
GTEX-13S86-1626-SM-5Q5C5 17.3
GTEX-QMRM-1226-SM-447C6 17.0
Show all