UBC

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:577.5 FPKM
GTEx:369.9 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Low
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA041344

 

Antibody HPA049132

 

Antibody CAB000362

 

Antibody CAB005419

 

Endothelial cells

Medium   Medium   Not detected   Medium  

Glandular cells

Medium   Medium   Low   Low  

Peripheral nerve/ganglion

Medium   Medium   Medium   Not available  
       
       
       

COLON - HPA RNA-seq

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Average FPKM

577.5

overview Male, age 54
Sample 1
FPKM: 423.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 532.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 498.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 521.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 736.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 643.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 687.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

369.9

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 400.3
Samples: 149

Max RPKM: 1689.1
Min RPKM: 183
Std RPKM: 190.9
Median RPKM: 354.2
GTEX-12ZZW-2426-SM-5DUWE 1689.1
GTEX-13X6I-2726-SM-5Q5ET 1194.6
GTEX-11PRG-2026-SM-5GU5F 1054.4
GTEX-14C39-1626-SM-5S2P4 934.2
GTEX-146FH-2426-SM-5Q5EW 789.2
GTEX-ZAB4-2426-SM-5HL8A 777.5
GTEX-132AR-2826-SM-5IJFV 769.4
GTEX-ZV6S-1126-SM-57WE9 750.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 339.4
Samples: 196

Max RPKM: 1822.4
Min RPKM: 151.6
Std RPKM: 195.6
Median RPKM: 300.2
GTEX-117YW-1826-SM-5PNY5 1822.4
GTEX-14C38-2626-SM-5RQI4 1753.2
GTEX-13O3P-2326-SM-5KM55 1369.4
GTEX-ZV6S-1226-SM-59HLH 774.4
GTEX-13O3O-2526-SM-5L3DR 740.0
GTEX-ZYVF-2826-SM-5GIDK 684.5
GTEX-WEY5-1426-SM-4LMJ3 659.5
GTEX-145ME-0826-SM-5O9AF 574.4
Show all