NFIC

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:11.7 FPKM
GTEx:25.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA052625

 

Antibody CAB004300

 

Antibody CAB004674

 

Endothelial cells

Not detected   Low   Medium  

Glandular cells

Medium   Low   Medium  

Peripheral nerve/ganglion

Medium   Not available   Medium  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

11.7

overview Male, age 54
Sample 1
FPKM: 12.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 14.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 8.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 12.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 15.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 13.0
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 6.0
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

25.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 33.2
Samples: 149

Max RPKM: 61
Min RPKM: 18.9
Std RPKM: 8.8
Median RPKM: 32.2
GTEX-131XG-1526-SM-5GCNQ 61.0
GTEX-139T6-1426-SM-5P9J7 56.3
GTEX-12BJ1-2026-SM-5FQUH 55.6
GTEX-13OVI-2126-SM-5KM3U 51.6
GTEX-ZLV1-1326-SM-4WWER 51.6
GTEX-1339X-1726-SM-5P9J9 49.3
GTEX-13O61-1526-SM-5KM3P 47.7
GTEX-WFG7-1626-SM-4LVMF 47.7
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 18.2
Samples: 196

Max RPKM: 54
Min RPKM: 3.4
Std RPKM: 11.6
Median RPKM: 14.6
GTEX-X5EB-0926-SM-46MVT 54.0
GTEX-ZV6S-1226-SM-59HLH 53.1
GTEX-WEY5-1426-SM-4LMJ3 47.3
GTEX-XAJ8-0426-SM-47JYJ 45.7
GTEX-S341-1426-SM-4AD6U 43.1
GTEX-12WSL-1626-SM-5GCMU 42.8
GTEX-Y114-1526-SM-4TT79 42.8
GTEX-11WQK-2126-SM-5EQME 42.2
Show all