SS18

COLON - Expression summary

? »

Protein expression

h
m
l
n

RNA expression

HPA:17.5 FPKM
GTEx:12.8 RPKM

COLON - Immunohistochemistry

? »

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA055741

 

Antibody HPA059539

 

Endothelial cells

Not detected   Medium  

Glandular cells

High   High  

Peripheral nerve/ganglion

Not detected   Not available  
   
   
   

COLON - HPA RNA-seq

? »

Average FPKM

17.5

overview Male, age 54
Sample 1
FPKM: 17.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 19.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 16.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 13.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 18.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 17.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 19.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

? »

Average RPKM

12.8

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 13.3
Samples: 149

Max RPKM: 18.7
Min RPKM: 8
Std RPKM: 1.8
Median RPKM: 13.1
GTEX-ZTTD-2626-SM-57WEX 18.7
GTEX-145ME-1126-SM-5SIAT 18.1
GTEX-11WQK-2526-SM-5CVL8 17.5
GTEX-Y9LG-1326-SM-4VBQB 17.4
GTEX-131XG-1526-SM-5GCNQ 17.1
GTEX-11EM3-1626-SM-5N9CO 16.6
GTEX-11ZU8-1126-SM-5EQ5K 16.6
GTEX-13FH7-1626-SM-5J2O9 16.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 12.4
Samples: 196

Max RPKM: 18.7
Min RPKM: 5.4
Std RPKM: 2.1
Median RPKM: 12
GTEX-13CF3-1426-SM-5K7YY 18.7
GTEX-Y114-1526-SM-4TT79 17.7
GTEX-148VJ-2626-SM-5QGPI 17.5
GTEX-X5EB-0926-SM-46MVT 17.4
GTEX-U3ZH-1326-SM-4DXSF 16.9
GTEX-S341-1426-SM-4AD6U 16.6
GTEX-111YS-1626-SM-5GZZ9 16.3
GTEX-13O3O-2526-SM-5L3DR 16.3
Show all