NPEPPS

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:22.4 FPKM
GTEx:22.9 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA021453

 

Antibody HPA045649

 

Endothelial cells

Not detected   Low  

Glandular cells

Medium   Medium  

Peripheral nerve/ganglion

Low   Not detected  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

22.4

overview Male, age 54
Sample 1
FPKM: 19.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 24.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 23.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 21.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 20.0
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 22.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 25.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

22.9

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 22.1
Samples: 149

Max RPKM: 33.5
Min RPKM: 11.2
Std RPKM: 4.4
Median RPKM: 21.6
GTEX-13VXT-2026-SM-5L3EW 33.5
GTEX-145ME-1126-SM-5SIAT 32.8
GTEX-ZPCL-1626-SM-57WGC 31.9
GTEX-ZAB5-1426-SM-5HL9D 31.3
GTEX-14E6E-1726-SM-5S2R6 30.7
GTEX-11DXX-1926-SM-5EGJK 30.1
GTEX-WHWD-1526-SM-4OORV 29.6
GTEX-Y3I4-1126-SM-4TT7Y 29.3
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 23.7
Samples: 196

Max RPKM: 38.2
Min RPKM: 14.2
Std RPKM: 4.1
Median RPKM: 23.2
GTEX-144GM-1226-SM-5LU52 38.2
GTEX-V955-1626-SM-4JBHJ 35.7
GTEX-14AS3-1126-SM-5Q5CR 35.6
GTEX-ZVT2-1926-SM-5GU5T 34.0
GTEX-11TT1-1026-SM-5PNW7 33.0
GTEX-13OVI-2026-SM-5J1MU 33.0
GTEX-OIZH-1426-SM-3NB1O 32.9
GTEX-RU1J-1326-SM-46MUL 32.6
Show all