SMARCAL1

COLON - Expression summary

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RNA expression

HPA:6.0 FPKM
GTEx:4.3 RPKM

COLON - Immunohistochemistry

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Antibody staining

Antibody HPA020337

 

Endothelial cells

Not detected  

Glandular cells

Low  

Peripheral nerve/ganglion

Not available  
 

COLON - HPA RNA-seq

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Average FPKM

6.0

overview Male, age 54
Sample 1
FPKM: 5.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 6.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 5.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 5.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 6.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 6.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 5.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

4.3

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 4.4
Samples: 149

Max RPKM: 7.5
Min RPKM: 1.7
Std RPKM: 1
Median RPKM: 4.3
GTEX-145LS-2926-SM-5O99G 7.5
GTEX-146FH-2426-SM-5Q5EW 6.8
GTEX-XV7Q-2226-SM-4BRVY 6.8
GTEX-13SLW-2826-SM-5Q5ES 6.6
GTEX-11P81-1426-SM-5P9JN 6.5
GTEX-13OW8-2726-SM-5L3FZ 6.5
GTEX-WYVS-1126-SM-4SOJX 6.5
GTEX-11EI6-2626-SM-5PNVT 6.4
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 4.3
Samples: 196

Max RPKM: 7.5
Min RPKM: 0.5
Std RPKM: 0.8
Median RPKM: 4.2
GTEX-U3ZH-1326-SM-4DXSF 7.5
GTEX-R53T-1326-SM-48FCQ 6.8
GTEX-11TT1-1026-SM-5PNW7 6.4
GTEX-11P81-1126-SM-5GU5G 6.1
GTEX-14BMV-2426-SM-5S2PP 5.9
GTEX-XXEK-1926-SM-4BRVD 5.9
GTEX-WHWD-1226-SM-4OOS1 5.8
GTEX-12ZZZ-2426-SM-5GCNN 5.7
Show all