CALCOCO2

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:85.0 FPKM
GTEx:26.8 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA022989

 

Antibody HPA023019

 

Antibody HPA023195

 

Endothelial cells

Medium   Low   Medium  

Glandular cells

Medium   Medium   High  

Peripheral nerve/ganglion

Medium   Low   Medium  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

85.0

overview Male, age 54
Sample 1
FPKM: 72.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 104.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 76.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 78.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 58.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 87.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 116.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

26.8

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 25.1
Samples: 149

Max RPKM: 39.6
Min RPKM: 12.2
Std RPKM: 5.8
Median RPKM: 24.9
GTEX-ZAJG-2626-SM-5S2NU 39.6
GTEX-ZVT2-1726-SM-51MRO 38.1
GTEX-11WQK-2526-SM-5CVL8 37.7
GTEX-WFON-1326-SM-4LVMN 37.6
GTEX-148VJ-2426-SM-5NQ9Y 36.8
GTEX-132AR-2826-SM-5IJFV 35.8
GTEX-1399U-2226-SM-5KLZI 35.6
GTEX-13OVI-2126-SM-5KM3U 34.7
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 28.5
Samples: 196

Max RPKM: 52
Min RPKM: 15.8
Std RPKM: 4.9
Median RPKM: 28.2
GTEX-13OVG-1426-SM-5K7VP 52.0
GTEX-13OVI-2026-SM-5J1MU 49.8
GTEX-ZXES-1626-SM-5NQ7L 43.0
GTEX-13W3W-2126-SM-5K7UX 39.9
GTEX-13O61-1626-SM-5KM3T 38.6
GTEX-X5EB-0926-SM-46MVT 38.2
GTEX-1128S-1626-SM-5H12O 36.6
GTEX-S341-1426-SM-4AD6U 36.5
Show all