LIAS

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:7.9 FPKM
GTEx:6.3 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA018842

 

Antibody HPA019076

 

Endothelial cells

Not detected   Medium  

Glandular cells

Medium   Medium  

Peripheral nerve/ganglion

Medium   Medium  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

7.9

overview Male, age 54
Sample 1
FPKM: 6.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 7.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 7.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 5.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 7.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 9.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 12.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

6.3

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 5.5
Samples: 149

Max RPKM: 9.3
Min RPKM: 2.4
Std RPKM: 1.3
Median RPKM: 5.5
GTEX-13X6K-2726-SM-5O9DG 9.3
GTEX-11P81-1426-SM-5P9JN 9.2
GTEX-Y9LG-1326-SM-4VBQB 8.8
GTEX-XV7Q-2226-SM-4BRVY 8.3
GTEX-ZPIC-2626-SM-57WE2 8.3
GTEX-1477Z-2126-SM-5Q5CM 8.1
GTEX-145ME-1126-SM-5SIAT 8.0
GTEX-13OW8-2726-SM-5L3FZ 7.8
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 7.0
Samples: 196

Max RPKM: 12.3
Min RPKM: 2
Std RPKM: 2
Median RPKM: 7
GTEX-Y5LM-1526-SM-4VDTA 12.3
GTEX-13O21-2426-SM-5MR4A 12.1
GTEX-UJMC-1326-SM-4IHLS 11.8
GTEX-ZPIC-2226-SM-57WDX 11.8
GTEX-147F3-1926-SM-5SIB9 11.7
GTEX-WFG7-1526-SM-4LVMG 11.6
GTEX-TML8-1326-SM-4DXTO 11.5
GTEX-XPVG-1826-SM-4B64X 10.9
Show all