CAT

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:67.6 FPKM
GTEx:28.2 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA051282

 

Antibody HPA055838

 

Antibody CAB001515

 

Endothelial cells

Not detected   Not detected   Not detected  

Glandular cells

Not detected   Not detected   Low  

Peripheral nerve/ganglion

Not detected   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

67.6

overview Male, age 54
Sample 1
FPKM: 53.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 67.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 66.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 64.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 39.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 82.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 99.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

28.2

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 23.3
Samples: 149

Max RPKM: 41.5
Min RPKM: 4.2
Std RPKM: 7
Median RPKM: 23.4
GTEX-XV7Q-2226-SM-4BRVY 41.5
GTEX-14E6E-1726-SM-5S2R6 41.3
GTEX-14BMU-1326-SM-5RQIH 39.6
GTEX-ZAB5-1426-SM-5HL9D 39.6
GTEX-13D11-0626-SM-5LZYY 36.2
GTEX-XUW1-1826-SM-4BOQD 35.7
GTEX-146FH-2426-SM-5Q5EW 35.2
GTEX-1399R-2126-SM-5K7WZ 34.9
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 33.2
Samples: 196

Max RPKM: 63.5
Min RPKM: 8.1
Std RPKM: 10.3
Median RPKM: 32.7
GTEX-13S86-1626-SM-5Q5C5 63.5
GTEX-WFG7-1526-SM-4LVMG 62.7
GTEX-R53T-1326-SM-48FCQ 59.8
GTEX-13D11-0826-SM-5KLZJ 55.6
GTEX-145LT-0926-SM-5LU9C 53.3
GTEX-XMK1-1726-SM-4B64Z 52.1
GTEX-XUJ4-2026-SM-4BOOW 51.9
GTEX-XV7Q-2126-SM-4BRVX 51.9
Show all