RARS

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:31.4 FPKM
GTEx:19.8 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA003979

 

Antibody HPA004130

 

Endothelial cells

Medium   Not detected  

Glandular cells

High   Low  

Peripheral nerve/ganglion

High   Medium  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

31.4

overview Male, age 54
Sample 1
FPKM: 25.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 28.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 31.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 23.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 35.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 39.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 35.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

19.8

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 18.0
Samples: 149

Max RPKM: 33.7
Min RPKM: 11.6
Std RPKM: 3.1
Median RPKM: 17.8
GTEX-11TT1-0926-SM-5GU5M 33.7
GTEX-14E6C-2226-SM-5QGQG 31.8
GTEX-11WQK-2526-SM-5CVL8 27.0
GTEX-ZTSS-1226-SM-51MSZ 24.6
GTEX-ZTTD-2626-SM-57WEX 24.0
GTEX-ZVT2-1726-SM-51MRO 24.0
GTEX-131XG-1526-SM-5GCNQ 23.9
GTEX-ZV6S-1126-SM-57WE9 23.4
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 21.5
Samples: 196

Max RPKM: 54.2
Min RPKM: 12.3
Std RPKM: 4.7
Median RPKM: 20.9
GTEX-11TT1-1026-SM-5PNW7 54.2
GTEX-T5JW-1126-SM-4DM5V 35.3
GTEX-146FQ-1926-SM-5NQBY 33.6
GTEX-U4B1-1126-SM-4DXV3 33.6
GTEX-144GM-1226-SM-5LU52 33.0
GTEX-O5YT-1426-SM-3MJHC 32.0
GTEX-1399R-2226-SM-5P9JB 30.5
GTEX-XMK1-1726-SM-4B64Z 30.1
Show all