BVES

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:2.5 FPKM
GTEx:8.1 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA014788

 

Antibody HPA018176

 

Endothelial cells

High   Not detected  

Glandular cells

Medium   Not detected  

Peripheral nerve/ganglion

Low   Not detected  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

2.5

overview Male, age 54
Sample 1
FPKM: 1.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 1.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 0.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 1.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 1.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 10.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 1.0
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

8.1

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 11.5
Samples: 149

Max RPKM: 26.9
Min RPKM: 4
Std RPKM: 3.7
Median RPKM: 11.3
GTEX-XAJ8-0726-SM-47JY5 26.9
GTEX-11I78-1326-SM-5PNY9 21.5
GTEX-ZG7Y-1826-SM-4WWD3 19.7
GTEX-14E6E-1726-SM-5S2R6 19.5
GTEX-1399R-2126-SM-5K7WZ 18.7
GTEX-XV7Q-2226-SM-4BRVY 18.7
GTEX-ZTSS-1226-SM-51MSZ 18.5
GTEX-11P7K-1826-SM-5HL5A 18.3
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 4.8
Samples: 196

Max RPKM: 22.4
Min RPKM: 0.1
Std RPKM: 4.8
Median RPKM: 3
GTEX-XAJ8-0426-SM-47JYJ 22.4
GTEX-XXEK-1926-SM-4BRVD 19.4
GTEX-13CF3-1426-SM-5K7YY 16.7
GTEX-T6MO-0826-SM-4DM51 16.4
GTEX-V955-1626-SM-4JBHJ 15.8
GTEX-14AS3-1126-SM-5Q5CR 15.7
GTEX-12WSL-1626-SM-5GCMU 15.4
GTEX-ZV6S-1226-SM-59HLH 15.2
Show all