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COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:19.5 FPKM
GTEx:37.1 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA011862

 

Antibody HPA067440

 

Antibody CAB000096

 

Antibody CAB072873

 

Endothelial cells

Not detected   Not detected   Not detected   Not detected  

Glandular cells

Low   Not detected   Not detected   Not detected  

Peripheral nerve/ganglion

Not detected   Not detected   Not detected   Not detected  
       
       

COLON - HPA RNA-seq

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Average FPKM

19.5

overview Male, age 54
Sample 1
FPKM: 20.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 13.0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 14.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 17.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 37.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 21.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 12.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

37.1

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 38.6
Samples: 149

Max RPKM: 132.9
Min RPKM: 14.4
Std RPKM: 17.2
Median RPKM: 35.5
GTEX-WFON-1326-SM-4LVMN 132.9
GTEX-ZYY3-2226-SM-5E45A 100.7
GTEX-13SLW-2826-SM-5Q5ES 90.8
GTEX-WI4N-2226-SM-4OOS9 88.0
GTEX-139D8-2926-SM-5IJBM 83.6
GTEX-13X6K-2726-SM-5O9DG 75.0
GTEX-ZV6S-1126-SM-57WE9 74.0
GTEX-ZAB4-2426-SM-5HL8A 72.4
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 35.5
Samples: 196

Max RPKM: 186.3
Min RPKM: 12
Std RPKM: 22.3
Median RPKM: 28.5
GTEX-13OVG-1426-SM-5K7VP 186.3
GTEX-13O3O-2526-SM-5L3DR 122.6
GTEX-ZAB4-2226-SM-5HL97 106.5
GTEX-13W3W-2126-SM-5K7UX 103.1
GTEX-111VG-2226-SM-5N9DU 100.9
GTEX-O5YT-1426-SM-3MJHC 89.7
GTEX-ZXES-1626-SM-5NQ7L 89.7
GTEX-147JS-2526-SM-5S2Q8 84.9
Show all