SMS

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:11.7 FPKM
GTEx:22.6 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA029849

 

Antibody HPA029852

 

Endothelial cells

Not detected   Medium  

Glandular cells

Not detected   Not detected  

Peripheral nerve/ganglion

Not detected   Low  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

11.7

overview Male, age 54
Sample 1
FPKM: 11.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 11.0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 13.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 14.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 13.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 9.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 8.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

22.6

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 25.0
Samples: 149

Max RPKM: 45.8
Min RPKM: 14.2
Std RPKM: 4.9
Median RPKM: 24.3
GTEX-ZDTS-2726-SM-5L3E2 45.8
GTEX-12WSM-1426-SM-5GCPA 45.3
GTEX-ZE7O-2626-SM-51MSS 39.4
GTEX-13G51-2126-SM-5IJD9 36.1
GTEX-ZPCL-1626-SM-57WGC 34.5
GTEX-145MO-2626-SM-5QGPD 33.7
GTEX-ZTSS-1226-SM-51MSZ 33.7
GTEX-11ZU8-1126-SM-5EQ5K 33.2
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 20.1
Samples: 196

Max RPKM: 40.7
Min RPKM: 9.2
Std RPKM: 4.6
Median RPKM: 19.4
GTEX-14AS3-1126-SM-5Q5CR 40.7
GTEX-14C38-2626-SM-5RQI4 34.0
GTEX-Z93S-2426-SM-5HL8N 34.0
GTEX-ZYVF-2826-SM-5GIDK 33.4
GTEX-1128S-1626-SM-5H12O 31.2
GTEX-11TTK-2426-SM-5PNYO 30.5
GTEX-145LS-2726-SM-5Q5D8 30.1
GTEX-ZY6K-1226-SM-5GZYL 30.0
Show all