SMARCB1

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:31.8 FPKM
GTEx:18.0 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA018248

 

Antibody HPA019127

 

Antibody CAB009196

 

Endothelial cells

High   High   Low  

Glandular cells

High   High   Medium  

Peripheral nerve/ganglion

Medium   High   Medium  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

31.8

overview Male, age 54
Sample 1
FPKM: 27.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 34.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 34.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 22.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 30.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 35.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 37.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

18.0

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 15.4
Samples: 149

Max RPKM: 29
Min RPKM: 5.9
Std RPKM: 3.2
Median RPKM: 15.2
GTEX-11TT1-0926-SM-5GU5M 29.0
GTEX-ZDTS-2726-SM-5L3E2 24.4
GTEX-11DXX-1926-SM-5EGJK 24.1
GTEX-11P81-1426-SM-5P9JN 22.0
GTEX-YJ8A-1726-SM-5P9IQ 21.6
GTEX-ZLFU-1426-SM-4WWEU 20.8
GTEX-11EQ9-1526-SM-5PNY7 20.4
GTEX-1399R-2126-SM-5K7WZ 20.4
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 20.7
Samples: 196

Max RPKM: 35
Min RPKM: 4.3
Std RPKM: 5.4
Median RPKM: 20.3
GTEX-R53T-1326-SM-48FCQ 35.0
GTEX-146FQ-1926-SM-5NQBY 33.6
GTEX-131XG-1826-SM-5LZV4 33.2
GTEX-11TT1-1026-SM-5PNW7 33.1
GTEX-QDVN-1326-SM-48TZ3 32.9
GTEX-XUJ4-2026-SM-4BOOW 31.6
GTEX-139TS-1926-SM-5IJFO 31.5
GTEX-Q2AI-0926-SM-48U1F 31.4
Show all