GANAB

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:76.2 FPKM
GTEx:63.4 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Medium
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA026874

 

Antibody HPA061426

 

Endothelial cells

Not detected   Medium  

Glandular cells

Medium   Medium  

Peripheral nerve/ganglion

Low   Low  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

76.2

overview Male, age 54
Sample 1
FPKM: 69.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 82.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 87.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 44.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 71.3
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 79.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 98.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

63.4

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 56.4
Samples: 149

Max RPKM: 85.5
Min RPKM: 33.1
Std RPKM: 8.4
Median RPKM: 56.6
GTEX-132AR-2826-SM-5IJFV 85.5
GTEX-11TT1-0926-SM-5GU5M 82.7
GTEX-13SLW-2826-SM-5Q5ES 76.0
GTEX-131XG-1526-SM-5GCNQ 73.9
GTEX-111CU-1226-SM-5EGIN 70.8
GTEX-13CF3-1326-SM-5LZXZ 70.5
GTEX-146FH-2426-SM-5Q5EW 69.9
GTEX-139D8-2926-SM-5IJBM 69.4
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 70.3
Samples: 196

Max RPKM: 113.6
Min RPKM: 21.1
Std RPKM: 13.3
Median RPKM: 68.6
GTEX-QDVN-1326-SM-48TZ3 113.6
GTEX-PWOO-1326-SM-48TCJ 105.9
GTEX-O5YT-1426-SM-3MJHC 105.3
GTEX-XUJ4-2026-SM-4BOOW 102.7
GTEX-QCQG-1626-SM-48U26 100.8
GTEX-YF7O-1726-SM-5IFJ9 98.2
GTEX-R53T-1326-SM-48FCQ 97.4
GTEX-XMK1-1726-SM-4B64Z 94.2
Show all