AAMDC

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:26.4 FPKM
GTEx:10.8 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA037918

 

Antibody HPA037919

 

Endothelial cells

Not detected   Not detected  

Glandular cells

Medium   Low  

Peripheral nerve/ganglion

Low   Low  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

26.4

overview Male, age 54
Sample 1
FPKM: 22.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 19.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 19.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 37.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 12.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 41.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 31.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

10.8

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 12.9
Samples: 149

Max RPKM: 24.2
Min RPKM: 6.6
Std RPKM: 3.3
Median RPKM: 12.5
GTEX-ZDTS-2726-SM-5L3E2 24.2
GTEX-11ZU8-1126-SM-5EQ5K 22.4
GTEX-11ZTS-1526-SM-5N9G7 22.2
GTEX-13G51-2126-SM-5IJD9 21.2
GTEX-ZYT6-2826-SM-5GICX 20.1
GTEX-11EMC-1426-SM-5N9E4 19.6
GTEX-12WSD-2626-SM-5EGJE 18.9
GTEX-131YS-2926-SM-5EGKI 18.6
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 8.7
Samples: 196

Max RPKM: 20.5
Min RPKM: 2.8
Std RPKM: 2.8
Median RPKM: 8.3
GTEX-11GSP-1626-SM-5986N 20.5
GTEX-145LS-2726-SM-5Q5D8 19.3
GTEX-11O72-2226-SM-5PNW2 17.1
GTEX-11TTK-2426-SM-5PNYO 16.9
GTEX-12ZZZ-2426-SM-5GCNN 16.4
GTEX-ZYFG-1926-SM-5GID5 14.6
GTEX-Z93S-2426-SM-5HL8N 14.5
GTEX-ZYFC-2626-SM-5NQ6S 14.1
Show all