SCGN

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:15.3 FPKM
GTEx:9.6 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA006641

 

Antibody CAB004005

 

Antibody CAB062563

 

Antibody CAB068232

 

Endothelial cells

Not detected   Not detected   Not detected   Not detected  

Glandular cells

Medium   Medium   Not detected   Medium  

Peripheral nerve/ganglion

High   Not detected   Medium   Not available  
       
       

COLON - HPA RNA-seq

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Average FPKM

15.3

overview Male, age 54
Sample 1
FPKM: 5.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 16.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 8.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 17.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 24.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 13.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 21.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

9.6

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 10.4
Samples: 149

Max RPKM: 50.2
Min RPKM: 0.2
Std RPKM: 6.8
Median RPKM: 9.4
GTEX-WFON-1326-SM-4LVMN 50.2
GTEX-13111-1926-SM-5GCOL 29.8
GTEX-11WQK-2526-SM-5CVL8 28.7
GTEX-X4EO-2726-SM-4E3HS 26.0
GTEX-XUZC-1526-SM-4BRV4 25.2
GTEX-148VJ-2426-SM-5NQ9Y 23.1
GTEX-ZYY3-2226-SM-5E45A 22.3
GTEX-13OW6-2226-SM-5N9FL 21.8
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 8.9
Samples: 196

Max RPKM: 51.4
Min RPKM: 0.4
Std RPKM: 7.2
Median RPKM: 6.8
GTEX-14BMV-2426-SM-5S2PP 51.4
GTEX-ZXES-1626-SM-5NQ7L 46.6
GTEX-12ZZZ-2426-SM-5GCNN 34.8
GTEX-145LS-2726-SM-5Q5D8 30.0
GTEX-145ME-0826-SM-5O9AF 28.7
GTEX-13O3P-2326-SM-5KM55 27.5
GTEX-13FHP-2426-SM-5KLZ5 26.3
GTEX-147JS-2526-SM-5S2Q8 26.0
Show all