JADE2

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:8.1 FPKM
GTEx:7.5 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA025959

 

Endothelial cells

Low  

Glandular cells

High  

Peripheral nerve/ganglion

Not detected  
 
 

COLON - HPA RNA-seq

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Average FPKM

8.1

overview Male, age 54
Sample 1
FPKM: 10.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 11.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 6.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 5.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 10.2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 6.0
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 7.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

7.5

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 8.3
Samples: 149

Max RPKM: 16.3
Min RPKM: 1.4
Std RPKM: 2.7
Median RPKM: 8.5
GTEX-1339X-1726-SM-5P9J9 16.3
GTEX-132AR-2826-SM-5IJFV 15.9
GTEX-131XG-1526-SM-5GCNQ 14.8
GTEX-XAJ8-0726-SM-47JY5 14.3
GTEX-11DXX-1926-SM-5EGJK 13.7
GTEX-139T6-1426-SM-5P9J7 13.7
GTEX-WHWD-1526-SM-4OORV 13.5
GTEX-YEC3-2026-SM-4WWFL 13.3
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 6.6
Samples: 196

Max RPKM: 15.8
Min RPKM: 1.1
Std RPKM: 2.4
Median RPKM: 6.2
GTEX-ZV6S-1226-SM-59HLH 15.8
GTEX-1339X-1626-SM-5IJDN 15.5
GTEX-V955-1626-SM-4JBHJ 13.9
GTEX-12WSL-1626-SM-5GCMU 13.8
GTEX-X5EB-0926-SM-46MVT 13.3
GTEX-S341-1426-SM-4AD6U 12.7
GTEX-XXEK-1926-SM-4BRVD 12.6
GTEX-117YX-0826-SM-5H11J 12.1
Show all