VCAN

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:8.3 FPKM
GTEx:4.9 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA004726

 

Antibody CAB008979

 

Endothelial cells

Not detected   Medium  

Glandular cells

Not detected   Medium  

Peripheral nerve/ganglion

Not detected   Medium  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

8.3

overview Male, age 54
Sample 1
FPKM: 10.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 6.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 5.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 3.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 14.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 11.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 7.0
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

4.9

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 6.1
Samples: 149

Max RPKM: 25.7
Min RPKM: 0.6
Std RPKM: 3.8
Median RPKM: 5.3
GTEX-14C39-1626-SM-5S2P4 25.7
GTEX-13OVJ-1826-SM-5KM2D 17.4
GTEX-WI4N-2226-SM-4OOS9 17.1
GTEX-11TT1-0926-SM-5GU5M 16.2
GTEX-11DXY-2026-SM-5N9CZ 14.3
GTEX-ZAB4-2426-SM-5HL8A 13.7
GTEX-12ZZW-2426-SM-5DUWE 13.5
GTEX-13X6I-2726-SM-5Q5ET 13.1
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 3.7
Samples: 196

Max RPKM: 20.5
Min RPKM: 0.4
Std RPKM: 4.1
Median RPKM: 2.1
GTEX-11WQK-2126-SM-5EQME 20.5
GTEX-145LS-2726-SM-5Q5D8 20.4
GTEX-13O3O-2526-SM-5L3DR 18.7
GTEX-O5YT-1426-SM-3MJHC 16.9
GTEX-13O3P-2326-SM-5KM55 16.0
GTEX-12ZZZ-2426-SM-5GCNN 15.1
GTEX-147JS-2526-SM-5S2Q8 15.1
GTEX-ZAB4-2226-SM-5HL97 15.1
Show all