SARS

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:61.9 FPKM
GTEx:37.8 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA016939

 

Endothelial cells

Low  

Glandular cells

Medium  

Peripheral nerve/ganglion

Medium  
 
 
 

COLON - HPA RNA-seq

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Average FPKM

61.9

overview Male, age 54
Sample 1
FPKM: 48.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 62.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 58.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 44.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 66.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 71.0
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 82.0
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

37.8

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 37.4
Samples: 149

Max RPKM: 76.9
Min RPKM: 18.8
Std RPKM: 8.2
Median RPKM: 37.7
GTEX-14E6C-2226-SM-5QGQG 76.9
GTEX-11WQK-2526-SM-5CVL8 71.7
GTEX-13O1R-2426-SM-5KLZZ 58.0
GTEX-148VJ-2426-SM-5NQ9Y 54.0
GTEX-14A5H-1626-SM-5SIAN 53.3
GTEX-1399U-2226-SM-5KLZI 52.6
GTEX-11TUW-2326-SM-5EQMO 50.0
GTEX-11P81-1426-SM-5P9JN 49.9
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 38.2
Samples: 196

Max RPKM: 85.1
Min RPKM: 20.1
Std RPKM: 7.6
Median RPKM: 36.5
GTEX-11TT1-1026-SM-5PNW7 85.1
GTEX-PWOO-1326-SM-48TCJ 70.2
GTEX-11WQK-2126-SM-5EQME 60.0
GTEX-11TUW-2026-SM-5EQL8 56.5
GTEX-X15G-1326-SM-4PQZJ 56.1
GTEX-13OVJ-1726-SM-5IJDZ 54.0
GTEX-1128S-1626-SM-5H12O 53.3
GTEX-O5YT-1426-SM-3MJHC 53.3
Show all