RTCA

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:18.5 FPKM
GTEx:8.5 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Not available

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA027982

 

Antibody HPA028151

 

Endothelial cells

Not detected   Not detected  

Glandular cells

Low   Medium  

Peripheral nerve/ganglion

Not available   Not available  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

18.5

overview Male, age 54
Sample 1
FPKM: 20.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 19.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 17.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 20.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 18.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 16.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 16.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

8.5

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 7.5
Samples: 149

Max RPKM: 11.1
Min RPKM: 4.7
Std RPKM: 1.2
Median RPKM: 7.3
GTEX-14E6C-2226-SM-5QGQG 11.1
GTEX-13X6K-2726-SM-5O9DG 10.6
GTEX-ZG7Y-1826-SM-4WWD3 10.6
GTEX-1477Z-2126-SM-5Q5CM 10.1
GTEX-ZYY3-2226-SM-5E45A 10.1
GTEX-13SLW-2826-SM-5Q5ES 10.0
GTEX-ZAJG-2626-SM-5S2NU 10.0
GTEX-14E6E-1726-SM-5S2R6 9.9
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 9.5
Samples: 196

Max RPKM: 16.5
Min RPKM: 4.2
Std RPKM: 2.1
Median RPKM: 9.5
GTEX-11TT1-1026-SM-5PNW7 16.5
GTEX-O5YT-1426-SM-3MJHC 15.4
GTEX-14E6E-1526-SM-5RQIG 15.0
GTEX-1399R-2226-SM-5P9JB 14.5
GTEX-132AR-2726-SM-5PNVN 14.2
GTEX-ZYWO-1626-SM-5E44H 14.2
GTEX-144GN-1126-SM-5LU33 14.0
GTEX-TML8-1326-SM-4DXTO 13.7
Show all