YARS

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:26.0 FPKM
GTEx:8.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA017936

 

Antibody HPA018950

 

Antibody HPA018954

 

Endothelial cells

Medium   Low   Low  

Glandular cells

High   High   High  

Peripheral nerve/ganglion

Low   Medium   Medium  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

26.0

overview Male, age 54
Sample 1
FPKM: 20.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 22.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 29.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 13.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 27.0
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 30.0
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 38.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

8.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 8.8
Samples: 149

Max RPKM: 30.2
Min RPKM: 5.2
Std RPKM: 3.9
Median RPKM: 7.5
GTEX-13O1R-2426-SM-5KLZZ 30.2
GTEX-11WQK-2526-SM-5CVL8 28.0
GTEX-11TUW-2326-SM-5EQMO 20.6
GTEX-14A5H-1626-SM-5SIAN 20.6
GTEX-14E6C-2226-SM-5QGQG 18.8
GTEX-12WSJ-1426-SM-5GCON 18.3
GTEX-XAJ8-0726-SM-47JY5 18.2
GTEX-11I78-1326-SM-5PNY9 16.1
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 8.6
Samples: 196

Max RPKM: 28.1
Min RPKM: 3.9
Std RPKM: 3.8
Median RPKM: 7.4
GTEX-11WQK-2126-SM-5EQME 28.1
GTEX-PWOO-1326-SM-48TCJ 27.1
GTEX-XYKS-2226-SM-4E3IU 23.9
GTEX-11TUW-2026-SM-5EQL8 22.9
GTEX-11TT1-1026-SM-5PNW7 21.2
GTEX-13OVJ-1726-SM-5IJDZ 18.6
GTEX-VJYA-2026-SM-4KL1K 18.0
GTEX-ZYVF-2826-SM-5GIDK 18.0
Show all