AMD1

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:31.8 FPKM
GTEx:20.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA029281

 

Antibody HPA029282

 

Endothelial cells

High   Not detected  

Glandular cells

High   Medium  

Peripheral nerve/ganglion

Medium   Not detected  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

31.8

overview Male, age 54
Sample 1
FPKM: 24.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 27.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 40.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 28.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 30.0
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 27.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 44.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

20.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 20.5
Samples: 149

Max RPKM: 61.3
Min RPKM: 10.5
Std RPKM: 6
Median RPKM: 19.7
GTEX-11WQK-2526-SM-5CVL8 61.3
GTEX-11I78-1326-SM-5PNY9 36.9
GTEX-13O1R-2426-SM-5KLZZ 36.1
GTEX-WI4N-2226-SM-4OOS9 33.9
GTEX-11EM3-1626-SM-5N9CO 33.5
GTEX-ZTSS-1226-SM-51MSZ 33.4
GTEX-ZY6K-1326-SM-5GZWP 31.8
GTEX-ZAJG-2626-SM-5S2NU 30.5
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 21.0
Samples: 196

Max RPKM: 72
Min RPKM: 10.7
Std RPKM: 6.6
Median RPKM: 19.9
GTEX-14C38-2626-SM-5RQI4 72.0
GTEX-11WQK-2126-SM-5EQME 42.5
GTEX-11TT1-1026-SM-5PNW7 38.6
GTEX-QMRM-1226-SM-447C6 36.9
GTEX-ZYVF-2826-SM-5GIDK 35.4
GTEX-R53T-1326-SM-48FCQ 33.8
GTEX-144GM-1226-SM-5LU52 33.3
GTEX-U4B1-1126-SM-4DXV3 32.9
Show all