NBN

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:14.0 FPKM
GTEx:9.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Medium

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA001429

 

Antibody CAB003836

 

Endothelial cells

Medium   Not detected  

Glandular cells

High   Medium  

Peripheral nerve/ganglion

High   Medium  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

14.0

overview Male, age 54
Sample 1
FPKM: 13.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 17.2
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 15.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 9.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 16.6
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 11.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 14.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

9.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 10.7
Samples: 149

Max RPKM: 20.7
Min RPKM: 5.4
Std RPKM: 2.8
Median RPKM: 10.4
GTEX-111YS-1826-SM-5GIEP 20.7
GTEX-131XG-1526-SM-5GCNQ 19.0
GTEX-ZPIC-2626-SM-57WE2 17.4
GTEX-ZQG8-2426-SM-57WEE 17.4
GTEX-11I78-1326-SM-5PNY9 16.8
GTEX-WFG7-1626-SM-4LVMF 16.8
GTEX-13VXT-2026-SM-5L3EW 16.0
GTEX-WFG8-1726-SM-4LVM6 15.7
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 8.6
Samples: 196

Max RPKM: 22.5
Min RPKM: 3.2
Std RPKM: 3.2
Median RPKM: 7.9
GTEX-13CF3-1426-SM-5K7YY 22.5
GTEX-111YS-1626-SM-5GZZ9 19.2
GTEX-117YX-0826-SM-5H11J 17.0
GTEX-14ICL-1226-SM-5S2RD 17.0
GTEX-13VXT-2426-SM-5LU46 15.8
GTEX-Y8LW-1226-SM-4WWDP 15.4
GTEX-12WSL-1626-SM-5GCMU 15.1
GTEX-S341-1426-SM-4AD6U 14.8
Show all