ABAT

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:6.9 FPKM
GTEx:0.9 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Low
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA041528

 

Antibody HPA041690

 

Endothelial cells

Not detected   Not detected  

Glandular cells

Low   Medium  

Peripheral nerve/ganglion

Not detected   Medium  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

6.9

overview Male, age 54
Sample 1
FPKM: 8.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 9.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 6.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 10.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 4.9
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 2.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 6.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

0.9

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 0.6
Samples: 149

Max RPKM: 2
Min RPKM: 0.2
Std RPKM: 0.3
Median RPKM: 0.6
GTEX-WFON-1326-SM-4LVMN 2.0
GTEX-117YX-0526-SM-5EGJH 1.9
GTEX-1211K-1826-SM-5EGJ2 1.7
GTEX-Y3I4-1126-SM-4TT7Y 1.7
GTEX-Y114-1626-SM-4TT7I 1.4
GTEX-YEC3-2026-SM-4WWFL 1.3
GTEX-139T6-1426-SM-5P9J7 1.2
GTEX-148VJ-2426-SM-5NQ9Y 1.2
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 1.2
Samples: 196

Max RPKM: 3.5
Min RPKM: 0.3
Std RPKM: 0.6
Median RPKM: 1
GTEX-11P7K-1526-SM-5EGI7 3.5
GTEX-11VI4-1526-SM-5EQKC 3.1
GTEX-ZF2S-1926-SM-4WWAN 3.1
GTEX-145MN-1726-SM-5SIA6 3.0
GTEX-OXRL-1426-SM-3NM9E 2.7
GTEX-WOFM-2026-SM-4OOSQ 2.7
GTEX-Y5LM-1526-SM-4VDTA 2.6
GTEX-11P82-1026-SM-5BC5J 2.5
Show all