FARSA

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:20.7 FPKM
GTEx:17.9 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:High
 

Antibody staining

Antibody HPA001911

 

Endothelial cells

Medium  

Glandular cells

High  

Peripheral nerve/ganglion

High  
 
 

COLON - HPA RNA-seq

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Average FPKM

20.7

overview Male, age 54
Sample 1
FPKM: 18.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 23.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 29.3
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 17.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 25.1
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 17.4
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 12.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

17.9

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 15.1
Samples: 149

Max RPKM: 32.3
Min RPKM: 8.7
Std RPKM: 3.2
Median RPKM: 14.7
GTEX-11TT1-0926-SM-5GU5M 32.3
GTEX-12WSL-1826-SM-5LZW9 23.5
GTEX-13O1R-2426-SM-5KLZZ 23.3
GTEX-1339X-1726-SM-5P9J9 22.8
GTEX-1399U-2226-SM-5KLZI 21.1
GTEX-Y5LM-1426-SM-5RQJL 21.1
GTEX-11P81-1426-SM-5P9JN 20.9
GTEX-146FH-2426-SM-5Q5EW 20.8
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 20.7
Samples: 196

Max RPKM: 51
Min RPKM: 8.8
Std RPKM: 6.7
Median RPKM: 19.9
GTEX-11TT1-1026-SM-5PNW7 51.0
GTEX-1399R-2226-SM-5P9JB 43.9
GTEX-146FQ-1926-SM-5NQBY 42.5
GTEX-PWOO-1326-SM-48TCJ 39.6
GTEX-144GM-1226-SM-5LU52 38.5
GTEX-XV7Q-2126-SM-4BRVX 37.8
GTEX-QMRM-1226-SM-447C6 36.9
GTEX-R53T-1326-SM-48FCQ 34.2
Show all