NFIA

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:9.5 FPKM
GTEx:7.5 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:High
Glandular cells:High
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA006111

 

Antibody HPA008884

 

Endothelial cells

High   High  

Glandular cells

High   Medium  

Peripheral nerve/ganglion

High   Not detected  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

9.5

overview Male, age 54
Sample 1
FPKM: 9.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 9.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 9.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 6.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 8.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 13.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 10.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

7.5

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 9.5
Samples: 149

Max RPKM: 14.3
Min RPKM: 5
Std RPKM: 1.9
Median RPKM: 9.3
GTEX-1477Z-2126-SM-5Q5CM 14.3
GTEX-12WSG-2426-SM-5EQLZ 13.6
GTEX-ZC5H-2426-SM-4WAZ6 13.6
GTEX-X4EO-2726-SM-4E3HS 13.4
GTEX-ZVZQ-2626-SM-59HLB 13.2
GTEX-13G51-2126-SM-5IJD9 13.1
GTEX-139D8-2926-SM-5IJBM 13.0
GTEX-11GS4-1826-SM-5HL4T 12.9
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 5.4
Samples: 196

Max RPKM: 15.4
Min RPKM: 1.5
Std RPKM: 2.9
Median RPKM: 4.4
GTEX-14BMV-2426-SM-5S2PP 15.4
GTEX-12ZZZ-2426-SM-5GCNN 13.1
GTEX-111VG-2226-SM-5N9DU 12.5
GTEX-U3ZH-1326-SM-4DXSF 12.1
GTEX-11ONC-2026-SM-5HL61 11.6
GTEX-13O3O-2526-SM-5L3DR 11.4
GTEX-Z93S-2426-SM-5HL8N 11.3
GTEX-145MO-2426-SM-5NQ9W 11.2
Show all