CAST

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:144.5 FPKM
GTEx:22.7 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Not detected

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA036881

 

Antibody HPA036882

 

Antibody CAB009491

 

Endothelial cells

Low   Not detected   Medium  

Glandular cells

Medium   High   Medium  

Peripheral nerve/ganglion

Not available   Not detected   Not detected  
     
     
     

COLON - HPA RNA-seq

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Average FPKM

144.5

overview Male, age 54
Sample 1
FPKM: 112.3
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 154.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 205.8
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 156.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 113.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 114.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 154.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

22.7

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 20.6
Samples: 149

Max RPKM: 37.6
Min RPKM: 6.7
Std RPKM: 6.1
Median RPKM: 20.4
GTEX-13OVI-2126-SM-5KM3U 37.6
GTEX-14C5O-2626-SM-5RQI5 37.2
GTEX-14E6E-1726-SM-5S2R6 35.9
GTEX-13D11-0626-SM-5LZYY 34.4
GTEX-11P7K-1826-SM-5HL5A 34.2
GTEX-Y114-1626-SM-4TT7I 34.2
GTEX-13O61-1526-SM-5KM3P 33.7
GTEX-131XG-1526-SM-5GCNQ 32.2
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 24.8
Samples: 196

Max RPKM: 52.6
Min RPKM: 11.3
Std RPKM: 6.3
Median RPKM: 24
GTEX-11TT1-1026-SM-5PNW7 52.6
GTEX-144GM-1226-SM-5LU52 46.8
GTEX-ZYWO-1626-SM-5E44H 42.9
GTEX-XMK1-1726-SM-4B64Z 39.5
GTEX-111CU-1426-SM-5GZYP 39.0
GTEX-131XG-1826-SM-5LZV4 38.9
GTEX-145MN-1726-SM-5SIA6 38.8
GTEX-ZF2S-1926-SM-4WWAN 38.1
Show all