ARID1A

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:11.8 FPKM
GTEx:12.2 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:Medium
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA005456

 

Antibody CAB016334

 

Endothelial cells

Not detected   High  

Glandular cells

Medium   High  

Peripheral nerve/ganglion

Not detected   High  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

11.8

overview Male, age 54
Sample 1
FPKM: 12.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 15.0
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 14.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 8.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 10.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 9.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 11.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

12.2

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 11.9
Samples: 149

Max RPKM: 18.3
Min RPKM: 7.3
Std RPKM: 2.1
Median RPKM: 12
GTEX-131XG-1526-SM-5GCNQ 18.3
GTEX-WYVS-1126-SM-4SOJX 16.6
GTEX-12WSG-2426-SM-5EQLZ 16.2
GTEX-ZP4G-1526-SM-57WE5 15.9
GTEX-WHWD-1526-SM-4OORV 15.7
GTEX-139T6-1426-SM-5P9J7 15.6
GTEX-14E6E-1726-SM-5S2R6 15.5
GTEX-11P81-1426-SM-5P9JN 15.4
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 12.5
Samples: 196

Max RPKM: 18.7
Min RPKM: 4.3
Std RPKM: 2
Median RPKM: 12.6
GTEX-R53T-1326-SM-48FCQ 18.7
GTEX-11NSD-1626-SM-5986U 16.8
GTEX-U3ZH-1326-SM-4DXSF 16.8
GTEX-WHWD-1226-SM-4OOS1 16.7
GTEX-144GN-1126-SM-5LU33 16.5
GTEX-X5EB-0926-SM-46MVT 16.5
GTEX-UPIC-1726-SM-4IHKG 16.1
GTEX-YEC4-1926-SM-5IFHJ 16.1
Show all