ARID1A

SOFT TISSUE - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:9.7 FPKM
GTEx:11.2 RPKM

SOFT TISSUE 1 - Immunohistochemistry

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Annotated protein
expression

Adipocytes:Low
Chondrocytes:Low
Fibroblasts:Low
Peripheral nerve:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA005456

 

Antibody CAB016334

 

Adipocytes

Not detected   Medium  

Chondrocytes

Not detected   Medium  

Fibroblasts

Not detected   Medium  

Peripheral nerve

Not detected   Medium  
   
   
   

SOFT TISSUE 2 - Immunohistochemistry

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Annotated protein
expression

Adipocytes:Low
Chondrocytes:Not available
Fibroblasts:Low
Peripheral nerve:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA005456

 

Antibody CAB016334

 

Adipocytes

Not detected   Medium  

Chondrocytes

Not available   Not available  

Fibroblasts

Not detected   Medium  

Peripheral nerve

Not available   Low  
   
   
   

ADIPOSE TISSUE - HPA RNA-seq

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Average FPKM

9.7

N/A Female, age 80
Sample 1
FPKM: 10.3
Cell types%
Adipocytes: 95
Other cell types: 5
N/A Female, age 45
Sample 2
FPKM: 6.0
N/A Female, age 57
Sample 3
FPKM: 5.3
Cell types%
Adipocytes: 60
Fibroblasts: 20
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 74
Sample 4
FPKM: 14.3
Cell types%
Adipocytes: 50
Fibroblasts: 30
Smooth muscle cells: 15
Other cell types: 5
overview Female, age 59
Sample 5
FPKM: 12.8
Cell types%
Adipocytes: 40
Fibroblasts: 40
Smooth muscle cells: 15
Other cell types: 5

ADIPOSE TISSUE - GTEx RNA-seq

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Average RPKM

11.2

GTEx sample id

RPKM

 

Adipose - Subcutaneous

Adipose - Subcutaneous
RPKM: 11.7
Samples: 350

Max RPKM: 17
Min RPKM: 5.1
Std RPKM: 1.7
Median RPKM: 11.7
GTEX-QCQG-1826-SM-2S1P2 17.0
GTEX-Q2AI-1426-SM-2S1P5 16.9
GTEX-13CF3-2326-SM-5IFGL 16.6
GTEX-OIZH-0226-SM-2YUMH 16.6
GTEX-OOBK-0226-SM-2YUMF 16.6
GTEX-111CU-1826-SM-5GZYN 15.9
GTEX-131XF-2226-SM-5EQKG 15.9
GTEX-PWN1-0226-SM-5SI7O 15.5
Show all
 

Adipose - Visceral (Omentum)

Adipose - Visceral (Omentum)
RPKM: 10.6
Samples: 227

Max RPKM: 17.6
Min RPKM: 5.1
Std RPKM: 2
Median RPKM: 10.5
GTEX-13N11-1826-SM-5IJDS 17.6
GTEX-13S86-0926-SM-5SI6I 16.8
GTEX-XYKS-1826-SM-4E3JV 15.5
GTEX-131XE-2026-SM-5LZW1 15.3
GTEX-12WSG-0426-SM-5FQSE 15.0
GTEX-UPK5-1826-SM-3GAEB 15.0
GTEX-XBED-1326-SM-4AT4F 14.7
GTEX-146FH-2026-SM-5SI9I 14.5
Show all