C9orf173

GENERAL INFORMATION

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Gene name

C9orf173

Gene description

Chromosome 9 open reading frame 173

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

4
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HUMAN PROTEIN ATLAS INFORMATION

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RNA tissue category

HPA:Tissue enriched (testis)
GTEx:Tissue enriched (testis)

Protein evidence

Evidence at transcript level

Protein localization

RNA data suggests expression in testis. RNA-based expert annotation could not be performed.

ANTIBODY RELIABILITY

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Data reliability
description

Pending external verification.

Data reliability

Uncertain based on 1 antibody.
HPA044352
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RNA AND PROTEIN EXPRESSION SUMMARY

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RNA expression (FPKM) Protein expression (score)
Brain
N/A
Endocrine tissues
N/A
Bone marrow & immune system
N/A
Muscle tissues
N/A
Lung
N/A
Nasopharynx
N/A
N/A
Bronchus
N/A
N/A
Lung
N/A
Liver & gallbladder
N/A
Liver
N/A
Pancreas
N/A
Pancreas
N/A
Gastrointestinal tract
N/A
Kidney & urinary bladder
N/A
Male tissues
N/A
Testis
N/A
Epididymis
N/A
N/A
Prostate
N/A
Seminal vesicle
N/A
N/A
Female tissues
N/A
Breast
N/A
N/A
Vagina
N/A
N/A
Cervix, uterine
N/A
N/A
Ovary
N/A
Placenta
N/A
Adipose & soft tissue
N/A
Skin
N/A
Skin
N/A
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis



PROTEIN EXPRESSION OVERVIEW

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RNA-based expert annotation could not be performed, due to inconclusive results. View immunohistochemistry primary data.


RNA EXPRESSION OVERVIEW

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HPA dataset
RNA tissue category:  Tissue enriched (testis)

Organ

Expression

GTEx dataset
RNA tissue category:  Tissue enriched (testis)

Organ

Expression



GENE INFORMATION

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Gene name

C9orf173 (HGNC Symbol)

Synonyms

FLJ40246

Description

Chromosome 9 open reading frame 173 (HGNC Symbol)

Entrez gene summary

Chromosome

9

Cytoband

q34.3

Chromosome location (bp)

137251261 - 137253483

Protein evidence

Evidence at transcript level (all genes)

Ensembl

ENSG00000197768 (version 78.38)

Entrez gene

441476

UniProt

Q8N7X2 (UniProt - Evidence at transcript level)

neXtProt

NX_Q8N7X2

Antibodypedia

C9orf173 antibodies


PROTEIN BROWSER

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ENST00000388931
 
ENST00000412566
 
ENST00000611378
 
ENST00000620243
 
 
 
 


PROTEIN INFORMATION

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Splice variant

Ensembl

UniProt

Protein class

Gene ontology

Length
(aa)

Molecular mass
(kDa)

Signal peptide
(predicted)

Transmembrane regions
(predicted)

C9orf173-001 ENSP00000373583
ENST00000388931
Q8N7X2
Show all »
Show » 386 42.5 No 0
C9orf173-002 ENSP00000391218
ENST00000412566
Q8N7X2
Show all »
Show » 308 34.1 No 0
C9orf173-003 ENSP00000482144
ENST00000620243
B7ZM74
Show all »
Show » 253 28.2 No 0
C9orf173-004 ENSP00000477998
ENST00000611378
Q8N7X2
Show all »
Show » 331 36.6 No 0