Predicted intracellular proteins
Transcription factors
   beta-Hairpin exposed by an alpha/beta-scaffold
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)

GO:0000122 [negative regulation of transcription from RNA polymerase II promoter]
GO:0000790 [nuclear chromatin]
GO:0000987 [core promoter proximal region sequence-specific DNA binding]
GO:0000988 [protein binding transcription factor activity]
GO:0001102 [RNA polymerase II activating transcription factor binding]
GO:0001501 [skeletal system development]
GO:0001649 [osteoblast differentiation]
GO:0001657 [ureteric bud development]
GO:0001666 [response to hypoxia]
GO:0001701 [in utero embryonic development]
GO:0001707 [mesoderm formation]
GO:0001756 [somitogenesis]
GO:0001889 [liver development]
GO:0001933 [negative regulation of protein phosphorylation]
GO:0001947 [heart looping]
GO:0002076 [osteoblast development]
GO:0002520 [immune system development]
GO:0003677 [DNA binding]
GO:0003682 [chromatin binding]
GO:0003690 [double-stranded DNA binding]
GO:0003700 [sequence-specific DNA binding transcription factor activity]
GO:0005160 [transforming growth factor beta receptor binding]
GO:0005515 [protein binding]
GO:0005518 [collagen binding]
GO:0005622 [intracellular]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005654 [nucleoplasm]
GO:0005667 [transcription factor complex]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0006351 [transcription, DNA-templated]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006810 [transport]
GO:0006919 [activation of cysteine-type endopeptidase activity involved in apoptotic process]
GO:0006955 [immune response]
GO:0007050 [cell cycle arrest]
GO:0007179 [transforming growth factor beta receptor signaling pathway]
GO:0007183 [SMAD protein complex assembly]
GO:0007369 [gastrulation]
GO:0007492 [endoderm development]
GO:0008013 [beta-catenin binding]
GO:0008134 [transcription factor binding]
GO:0008270 [zinc ion binding]
GO:0008285 [negative regulation of cell proliferation]
GO:0009880 [embryonic pattern specification]
GO:0010467 [gene expression]
GO:0010628 [positive regulation of gene expression]
GO:0010694 [positive regulation of alkaline phosphatase activity]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0016202 [regulation of striated muscle tissue development]
GO:0017015 [regulation of transforming growth factor beta receptor signaling pathway]
GO:0019049 [evasion or tolerance of host defenses by virus]
GO:0019899 [enzyme binding]
GO:0019901 [protein kinase binding]
GO:0019902 [phosphatase binding]
GO:0023019 [signal transduction involved in regulation of gene expression]
GO:0030308 [negative regulation of cell growth]
GO:0030335 [positive regulation of cell migration]
GO:0030501 [positive regulation of bone mineralization]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0030618 [transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity]
GO:0030878 [thyroid gland development]
GO:0031053 [primary miRNA processing]
GO:0031490 [chromatin DNA binding]
GO:0031625 [ubiquitin protein ligase binding]
GO:0032332 [positive regulation of chondrocyte differentiation]
GO:0032731 [positive regulation of interleukin-1 beta production]
GO:0032909 [regulation of transforming growth factor beta2 production]
GO:0032916 [positive regulation of transforming growth factor beta3 production]
GO:0032924 [activin receptor signaling pathway]
GO:0033689 [negative regulation of osteoblast proliferation]
GO:0035326 [enhancer binding]
GO:0035413 [positive regulation of catenin import into nucleus]
GO:0035556 [intracellular signal transduction]
GO:0038092 [nodal signaling pathway]
GO:0042060 [wound healing]
GO:0042110 [T cell activation]
GO:0042177 [negative regulation of protein catabolic process]
GO:0042803 [protein homodimerization activity]
GO:0042993 [positive regulation of transcription factor import into nucleus]
GO:0043066 [negative regulation of apoptotic process]
GO:0043130 [ubiquitin binding]
GO:0043234 [protein complex]
GO:0043235 [receptor complex]
GO:0043425 [bHLH transcription factor binding]
GO:0043565 [sequence-specific DNA binding]
GO:0044212 [transcription regulatory region DNA binding]
GO:0045216 [cell-cell junction organization]
GO:0045668 [negative regulation of osteoblast differentiation]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045930 [negative regulation of mitotic cell cycle]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0046332 [SMAD binding]
GO:0048340 [paraxial mesoderm morphogenesis]
GO:0048589 [developmental growth]
GO:0048617 [embryonic foregut morphogenesis]
GO:0048701 [embryonic cranial skeleton morphogenesis]
GO:0050678 [regulation of epithelial cell proliferation]
GO:0050728 [negative regulation of inflammatory response]
GO:0050776 [regulation of immune response]
GO:0050821 [protein stabilization]
GO:0050927 [positive regulation of positive chemotaxis]
GO:0051098 [regulation of binding]
GO:0051496 [positive regulation of stress fiber assembly]
GO:0051894 [positive regulation of focal adhesion assembly]
GO:0060039 [pericardium development]
GO:0060290 [transdifferentiation]
GO:0060395 [SMAD protein signal transduction]
GO:0061045 [negative regulation of wound healing]
GO:0070306 [lens fiber cell differentiation]
GO:0070410 [co-SMAD binding]
GO:0070412 [R-SMAD binding]
GO:0071141 [SMAD protein complex]
GO:0071144 [SMAD2-SMAD3 protein complex]
GO:0090263 [positive regulation of canonical Wnt signaling pathway]
GO:0097191 [extrinsic apoptotic signaling pathway]
GO:0097296 [activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway]
GO:1901313 [positive regulation of gene expression involved in extracellular matrix organization]

Predicted intracellular proteins
Transcription factors
   beta-Hairpin exposed by an alpha/beta-scaffold
Cancer-related genes
   Candidate cancer biomarkers
Disease related genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)

GO:0000122 [negative regulation of transcription from RNA polymerase II promoter]
GO:0000790 [nuclear chromatin]
GO:0000987 [core promoter proximal region sequence-specific DNA binding]
GO:0000988 [protein binding transcription factor activity]
GO:0001102 [RNA polymerase II activating transcription factor binding]
GO:0001666 [response to hypoxia]
GO:0001933 [negative regulation of protein phosphorylation]
GO:0003700 [sequence-specific DNA binding transcription factor activity]
GO:0005160 [transforming growth factor beta receptor binding]
GO:0005515 [protein binding]
GO:0005622 [intracellular]
GO:0005634 [nucleus]
GO:0005637 [nuclear inner membrane]
GO:0005654 [nucleoplasm]
GO:0005667 [transcription factor complex]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006351 [transcription, DNA-templated]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006367 [transcription initiation from RNA polymerase II promoter]
GO:0006810 [transport]
GO:0006919 [activation of cysteine-type endopeptidase activity involved in apoptotic process]
GO:0006955 [immune response]
GO:0007050 [cell cycle arrest]
GO:0007179 [transforming growth factor beta receptor signaling pathway]
GO:0007183 [SMAD protein complex assembly]
GO:0008013 [beta-catenin binding]
GO:0008134 [transcription factor binding]
GO:0008270 [zinc ion binding]
GO:0010467 [gene expression]
GO:0010628 [positive regulation of gene expression]
GO:0010718 [positive regulation of epithelial to mesenchymal transition]
GO:0017015 [regulation of transforming growth factor beta receptor signaling pathway]
GO:0019049 [evasion or tolerance of host defenses by virus]
GO:0019901 [protein kinase binding]
GO:0019902 [phosphatase binding]
GO:0030308 [negative regulation of cell growth]
GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway]
GO:0030618 [transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity]
GO:0031053 [primary miRNA processing]
GO:0031625 [ubiquitin protein ligase binding]
GO:0032909 [regulation of transforming growth factor beta2 production]
GO:0032924 [activin receptor signaling pathway]
GO:0035326 [enhancer binding]
GO:0035413 [positive regulation of catenin import into nucleus]
GO:0035556 [intracellular signal transduction]
GO:0038092 [nodal signaling pathway]
GO:0042060 [wound healing]
GO:0042177 [negative regulation of protein catabolic process]
GO:0042803 [protein homodimerization activity]
GO:0042993 [positive regulation of transcription factor import into nucleus]
GO:0043130 [ubiquitin binding]
GO:0043235 [receptor complex]
GO:0043425 [bHLH transcription factor binding]
GO:0043565 [sequence-specific DNA binding]
GO:0044212 [transcription regulatory region DNA binding]
GO:0045216 [cell-cell junction organization]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045930 [negative regulation of mitotic cell cycle]
GO:0045944 [positive regulation of transcription from RNA polymerase II promoter]
GO:0050821 [protein stabilization]
GO:0070410 [co-SMAD binding]
GO:0070412 [R-SMAD binding]
GO:0071141 [SMAD protein complex]
GO:0071144 [SMAD2-SMAD3 protein complex]
GO:0090263 [positive regulation of canonical Wnt signaling pathway]
GO:0097191 [extrinsic apoptotic signaling pathway]
GO:1901313 [positive regulation of gene expression involved in extracellular matrix organization]

   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)

GO:0005515 [protein binding]
GO:0005622 [intracellular]
GO:0006355 [regulation of transcription, DNA-templated]

GO:0005515 [protein binding]
GO:0005622 [intracellular]
GO:0006355 [regulation of transcription, DNA-templated]

GO:0003700 [sequence-specific DNA binding transcription factor activity]
GO:0005515 [protein binding]
GO:0005622 [intracellular]
GO:0005667 [transcription factor complex]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0007179 [transforming growth factor beta receptor signaling pathway]